.PHONY: all data benchmarks hmts simulation panel vintages revisions validation external figures tables paper test provenance
PY ?= python3
all: data benchmarks hmts panel vintages revisions validation external simulation figures tables paper
data:
	$(PY) scripts/01_extract_snapshot.py; $(PY) scripts/02_profile.py; $(PY) scripts/03_geography.py; $(PY) scripts/04_clean.py; $(PY) scripts/05_arrival_lags.py; $(PY) scripts/06_provenance_report.py
benchmarks:
	$(PY) scripts/10_benchmarks.py
hmts:
	$(PY) scripts/11_hmts.py
simulation:
	$(PY) scripts/20_simulation.py --reps 80 --workers 12; $(PY) scripts/21_mc_summary.py
panel:
	$(PY) scripts/30_panel.py
vintages:
	$(PY) scripts/40_vintages.py
revisions:
	$(PY) scripts/41_revisions.py
validation:
	for c in repeat composition placebo moran bootstrap aggregation ablation trim; do $(PY) scripts/50_validation.py $$c; done
external:
	$(PY) scripts/62_external.py
figures:
	$(PY) scripts/60_figures.py
tables:
	$(PY) scripts/61_tables.py
paper: figures tables
	cd paper && latexmk -pdf -interaction=nonstopmode -halt-on-error main.tex
test:
	$(PY) -m pytest -q tests
provenance:
	$(PY) scripts/06_provenance_report.py