1# Claude Code command test from a separate project (2026-11-03)23- Sample project: `/tmp/sample-paper` (fresh git repo, `paper/main.tex` + `sections/intro.tex` + `references.bib`; a deliberately flawed 3-section manuscript: unknown citation key `berger1995`, unqualified causal sentence, table without notes).4- Command: `cd /tmp/sample-paper && claude -p "/jof-audit /tmp/sample-paper" --output-format text` (Claude Code 2.1.317, user-scope command installed by `jof250 install-claude-code --scope user`).5- Observed: the assistant ran `…/.venv/bin/jof250 audit --paper /tmp/sample-paper --output /tmp/jof-audit.md`, read the report and returned a severity-ordered summary with patch proposals (bib entry for the missing key flagged `CONFIRM`, rewording of the causal sentence, table caption + notes with explicit placeholders for the SE and clustering) — no file in the sample project was modified. Report copied to `separate_project_jof_audit_report.md`.6