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analysis WP45 v1.0: benchmark run 2 (A-004), results/ablations/failure sections, revised...
fixtures docs: preregistration commit hash after history rewrite
outputs docs: preregistration commit hash after history rewrite
protocols WP45: parser+QA, ontology annotation, profiles, hybrid index, writing engine,...
preregistration.md WP45: fix Markdown manuscript loader/material (A-004), task framing, archive...

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