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architecture Paper: non-results sections drafted (agent), amendment A1 (common W1 scale), doc...
data_governance Data card draft
experiments Paper: non-results sections drafted (agent), amendment A1 (common W1 scale), doc...
gates Gate C report, D17 (denoising pretraining), STATUS update
literature WP-AI-0002: repository scaffold, licence governance, PMC S3 ingest, JATS parser,...
reproducibility Paper: non-results sections drafted (agent), amendment A1 (common W1 scale), doc...
DECISION_LOG.md D19: mask same-passage negatives in InfoNCE
IMPLEMENTATION_CHECKLIST.md Add arXiv/LaTeX, Crossref/PDF and books adapters (agents), governance docs,...
MANDATE.md WP-AI-0002: repository scaffold, licence governance, PMC S3 ingest, JATS parser,...
PREREGISTRATION.md Paper: non-results sections drafted (agent), amendment A1 (common W1 scale), doc...
RESEARCH_GAP.md WP-AI-0002: repository scaffold, licence governance, PMC S3 ingest, JATS parser,...
RISK_REGISTER.md Add arXiv/LaTeX, Crossref/PDF and books adapters (agents), governance docs,...
STATUS.md STATUS: seed results, denoising runs

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