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Latest commit B2: MPS cache release and padded shapes 3b399f3

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__init__.py WP-AI-0002: repository scaffold, licence governance, PMC S3 ingest, JATS parser, segmentation,...
data.py D19: mask same-passage negatives in InfoNCE
denoise.py Denoising pretraining stage (unlabelled originals), --init-from fine-tuning, no-repeat n-gram...
hf_finetune.py B2: MPS cache release and padded shapes
trainer.py Checkpoints always carry the tokenizer (partial runs stay loadable)

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