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spbcancerindex

Page 1 · 39 commits on main

  1. Fri, Sep 11, 202610 commits

    1. Knowledge graph: contextual neighbourhoods (source-native edges + derived registry links), radial SVG explorer /graph, cancer→gene→variant→drug→approval→trial paths, /v1/graph API, methodology
      ···
      Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
      Simon-Pierre Boucher 11 files +2,904 −5
    2. Data explorer: /explore (metric × cancers × geography × sex × age × years → comparable chart groups + table + CSV/JSON/permalink), coverage matrix, /v1/epidemiology API, methodology
      ···
      Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
      Simon-Pierre Boucher 18 files +2,321 −5
    3. Clinical trial intelligence: per-cancer trial metrics (growth, enrollment, sponsor/country HHI, termination share, burden-normalized), stop-reason classifier, 4 ranking snapshots, /trials/intelligence and /trials/terminated, API, CSV, cancer tab strip
      ···
      Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
      Simon-Pierre Boucher 15 files +2,021 −13
    4. Clinical trial map: country site aggregates (trial_site_country_counts), ISO mapping, Equal Earth choropleth, /trials/map, /v1/trials/sites, methodology
      ···
      Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
      Simon-Pierre Boucher 21 files +2,018 −6
    5. Research Gap Index: components table, share/log2-ratio metrics, per-1000-deaths snapshots, /research-gap page with log-log scatter, API, CSV export, methodology
      ···
      Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
      Simon-Pierre Boucher 11 files +1,917 −78
    6. Sitemap: widen nav types for cross-list comparison
      Simon-Pierre Boucher 1 file +2 −2
    7. Dark mode (theme tokens, toggle, boot script), theme-aware chart palette, home hero/ticker, sitemap secondary nav, deploy manifest without ngrok
      ···
      Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
      Simon-Pierre Boucher 11 files +224 −36
    8. Drug reconciliation: deterministic tie-break for aliases shared by salt-form duplicates
      ···
      Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
      Simon-Pierre Boucher 1 file +31 −4
    9. Split research-gap routes, trial-sites stub, unit labels for new metrics
      ···
      Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
      Simon-Pierre Boucher 8 files +56 −18
    10. Foundation for wave 3: intelligence schema (trial_intelligence, trial_site_country_counts, drug_pipeline, drug_codes, research_gap_components; migration 0002), trial intervention→drug reconciliation (alias/salt-stripped/probabilistic), new metric definitions (trial growth, termination share, sponsor HHI, per-1000-deaths, gap ratios), maintenance.intel job, API route stubs (epidemiology/approvals/graph/intelligence), navigation restructure
      ···
      Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
      Simon-Pierre Boucher 27 files +8,980 −12

  2. Tue, Sep 8, 202610 commits

    1. Resolver: byCode carries recorded match types (alias/lineage codes); MeSH/ChEMBL docs
      Simon-Pierre Boucher 2 files +33 −7
    2. Web: paginate approvals and gene cohort tables
      Simon-Pierre Boucher 8 files +64 −17
    3. SDK HttpClient: body-read timeout with retry (stalled ChEMBL responses)
      Simon-Pierre Boucher 6 files +109 −12
    4. Wave 2: SDK checkpoints/abort/anomaly guard/alerts, cix doctor, backups, perf indexes, migration 0001; MeSH, ChEMBL, openFDA, cBioPortal connectors; web pagination/QA/tests/caching, countries, compare, key figures; USCS sex-specific rate fix
      Simon-Pierre Boucher 168 files +23,243 −793
    5. Web: single provenance popover per evidence table, compact row badges
      Simon-Pierre Boucher 2 files +18 −3
    6. Web: compact gene-centric cohort frequency table
      Simon-Pierre Boucher 2 files +60 −2
    7. Web: latest-year rankings per scope, statistics table trimmed; gap-metric caveats
      Simon-Pierre Boucher 3 files +21 −5
    8. Web: align therapy names with slugs, cap evidence/variant lists, truncate descriptions; ranking eligibility; SDK field-stats COALESCE; resolver lineage/display/qualifier fallbacks
      Simon-Pierre Boucher 5 files +17 −14
    9. Phase 1: NCIt/OncoTree/HGNC/CIViC/ClinVar/GDC/ClinicalTrials/PubMed/CDC WONDER connectors, ranking engine, Fastify API, pg-boss worker, Next.js web app, docs, deploy
      Simon-Pierre Boucher 272 files +37,750 −123
    10. Foundation: monorepo, schema, provenance SDK, ontology resolver, ranking engine, OncoTree connector
      Simon-Pierre Boucher 74 files +13,851
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