spb/cancerindex

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37commits 1branches 0releases

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10 days agolast push

TypeScript 97.2% SQL 1.5% CSS 0.6% JavaScript 0.5%

Mon, Sep 14, 2026 1
1. deploy: production moved to OVH BHS128b (native PM2/Postgres), release procedure; Mac copy kept cold
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 10 days ago · 2 files +15 −4
Fri, Sep 11, 2026 26
1. README: detailed project guide with brand mark, product map, architecture, data model, connectors, derived layer, metrics, API, CLI, setup, operations, gotchas, roadmap
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 1 file +463 −68
2. Brand: unique SVG mark (open ring C + graduated index I), header/footer wordmark, favicon (svg/ico/apple), web manifest, Open Graph / Twitter share images rendered server-side with site fonts (site default with live counts + cancer/gene/drug/biomarker/trial images)
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 27 files +388 −4
3. Site identity: author Simon-Pierre Boucher, contact@spboucher.ai, hosted on MacLustr (www.maclustr.io) in footer, About, methodology, metadata and OpenAPI contact
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 6 files +40 −7
4. QA: weight cap for the BRAF biomarker page
  
  Simon-Pierre Boucher committed 13 days ago · 1 file +1 −1
5. Biomarkers: 54 NCIt-verified canonical biomarkers (seed), /biomarkers and /biomarker/[slug] with derived links, /v1/biomarkers API, methodology, sitemap, nav; fix silent failure of the trials 'active' status filter (array param inside ANY)
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 16 files +2,053 −8
6. openFDA: shared parent/child aliases resolve to the broadest concept (fixes 67 approvals mapped to childhood entities), backfill supersedes edges no longer asserted; RawLake.read returns null on a missing file instead of hanging the process
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 5 files +121 −5
7. EMA connector: medicines data xlsx (exceljs), oncology scope by ATC/MeSH/indication, EU approval rows with authorisation dates and statuses, indication-text cancer mapping, APPROVED_FOR edges, drug codes, fixtures and tests
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 12 files +2,629 −1
8. Year in cancer (/year/[year]): approvals, studies by phase/cancer/sponsor, PubMed output per cancer, registry observations for the year
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 5 files +518
9. Country pages: clinical trial activity (sites by cancer and phase from trial_site_country_counts) and jurisdiction approval records; pulse link on home
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 5 files +277 −1
10. API smoke tests for wave-3 routes; repository guide: routes, theme tokens, ref-prop rule
  
  Simon-Pierre Boucher committed 13 days ago · 2 files +162 −3
11. Pulse (/pulse: approvals, new recruiting Phase III, registration momentum, ranking moves, publications, dataset refreshes) and /data-updates log; lighter home (no map SVG) and graph defaults
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 7 files +746 −7
12. Deploy manifest: anchor the coverage/ exclude to the repo root (it dropped apps/web/src/app/explore/coverage)
  
  Simon-Pierre Boucher committed 13 days ago · 1 file +1 −1
13. GraphLink: rename reserved ref prop to entityRef (server components refuse ref); QA weight caps for home and graph
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 7 files +12 −11
14. Home: approvals module; drug page: graph link
  
  Simon-Pierre Boucher committed 13 days ago · 2 files +6
15. Regulatory layer: Health Canada DPD connector (ATC L01/L02/L03/V10, DIN-level approval records, drug minting + codes), /approvals feed, drug development pipeline (drug_pipeline) with /pipeline, duplicate-drug merge proposals, drug page identifiers/pipeline, API
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 35 files +3,266 −17
16. Integration: home modules (explorer, trial intelligence, map, graph), graph links on entity pages, gap card on cancer rankings tab, methodology sections, API docs, QA routes
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 10 files +144 −48
17. Knowledge graph: contextual neighbourhoods (source-native edges + derived registry links), radial SVG explorer /graph, cancer→gene→variant→drug→approval→trial paths, /v1/graph API, methodology
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 11 files +2,904 −5
18. Data explorer: /explore (metric × cancers × geography × sex × age × years → comparable chart groups + table + CSV/JSON/permalink), coverage matrix, /v1/epidemiology API, methodology
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 18 files +2,321 −5
19. Clinical trial intelligence: per-cancer trial metrics (growth, enrollment, sponsor/country HHI, termination share, burden-normalized), stop-reason classifier, 4 ranking snapshots, /trials/intelligence and /trials/terminated, API, CSV, cancer tab strip
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 15 files +2,021 −13
20. Clinical trial map: country site aggregates (trial_site_country_counts), ISO mapping, Equal Earth choropleth, /trials/map, /v1/trials/sites, methodology
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 21 files +2,018 −6
21. Research Gap Index: components table, share/log2-ratio metrics, per-1000-deaths snapshots, /research-gap page with log-log scatter, API, CSV export, methodology
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 11 files +1,917 −78
22. Sitemap: widen nav types for cross-list comparison
  
  Simon-Pierre Boucher committed 13 days ago · 1 file +2 −2
23. Dark mode (theme tokens, toggle, boot script), theme-aware chart palette, home hero/ticker, sitemap secondary nav, deploy manifest without ngrok
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 11 files +224 −36
24. Drug reconciliation: deterministic tie-break for aliases shared by salt-form duplicates
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 1 file +31 −4
25. Split research-gap routes, trial-sites stub, unit labels for new metrics
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 8 files +56 −18
26. Foundation for wave 3: intelligence schema (trial_intelligence, trial_site_country_counts, drug_pipeline, drug_codes, research_gap_components; migration 0002), trial intervention→drug reconciliation (alias/salt-stripped/probabilistic), new metric definitions (trial growth, termination share, sponsor HHI, per-1000-deaths, gap ratios), maintenance.intel job, API route stubs (epidemiology/approvals/graph/intelligence), navigation restructure
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  Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
  Simon-Pierre Boucher committed 13 days ago · 27 files +8,980 −12
Tue, Sep 8, 2026 10
1. Resolver: byCode carries recorded match types (alias/lineage codes); MeSH/ChEMBL docs
  
  Simon-Pierre Boucher committed 16 days ago · 2 files +33 −7
2. Web: paginate approvals and gene cohort tables
  
  Simon-Pierre Boucher committed 16 days ago · 8 files +64 −17
3. SDK HttpClient: body-read timeout with retry (stalled ChEMBL responses)
  
  Simon-Pierre Boucher committed 16 days ago · 6 files +109 −12
4. Wave 2: SDK checkpoints/abort/anomaly guard/alerts, cix doctor, backups, perf indexes, migration 0001; MeSH, ChEMBL, openFDA, cBioPortal connectors; web pagination/QA/tests/caching, countries, compare, key figures; USCS sex-specific rate fix
  
  Simon-Pierre Boucher committed 16 days ago · 168 files +23,243 −793
5. Web: single provenance popover per evidence table, compact row badges
  
  Simon-Pierre Boucher committed 16 days ago · 2 files +18 −3
6. Web: compact gene-centric cohort frequency table
  
  Simon-Pierre Boucher committed 16 days ago · 2 files +60 −2
7. Web: latest-year rankings per scope, statistics table trimmed; gap-metric caveats
  
  Simon-Pierre Boucher committed 16 days ago · 3 files +21 −5
8. Web: align therapy names with slugs, cap evidence/variant lists, truncate descriptions; ranking eligibility; SDK field-stats COALESCE; resolver lineage/display/qualifier fallbacks
  
  Simon-Pierre Boucher committed 16 days ago · 5 files +17 −14
9. Phase 1: NCIt/OncoTree/HGNC/CIViC/ClinVar/GDC/ClinicalTrials/PubMed/CDC WONDER connectors, ranking engine, Fastify API, pg-boss worker, Next.js web app, docs, deploy
  
  Simon-Pierre Boucher committed 16 days ago · 272 files +37,750 −123
10. Foundation: monorepo, schema, provenance SDK, ontology resolver, ranking engine, OncoTree connector
  
  Simon-Pierre Boucher committed 16 days ago · 74 files +13,851

Mon, Sep 14, 2026 1

Fri, Sep 11, 2026 26

Tue, Sep 8, 2026 10